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The following layers are not assigned to any polygons


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It sounds like you are activating cells in your model, which is done via polygons in the conceptual model approach. Therefore, if the coverage being used to activate cells is only assigned to layer 1 (see your coverage setup), then GMS gives you that message. Also, you may not have the box checked off which says "use to define model boundary (active area)" for the correct coverages.

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