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Tom said to mention this here on behalf of technical support. When exporting native text MODFLOW files, the files are not updated with new information. For example put new information into the MODFLOW | Global Options | Optional Packages | RCH package and click OK. Unless the project is manually saved after making the edit and before exporting the native text file those changes aren't saved, but users may not realize clicking OK doesn't update the files. It may be helpful for the user to receive a reminder that 'You have not yet saved your changes to the model. Would you like to save these changes before exporting the native files?' or something along those lines.
When I am in the mesh module (ADCIRC) and making mesh edits I would like to have a hot key that can automatically save the mesh (*.grd/14) and overwrite the last save (with permission). Since there is not an undo, I frequency save the mesh file and would like to eliminate the file > save as > type *.grd > ... Is there a way to currently do this as these key strokes / mouse clicks would save a lot of time! - Matt