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Question about node flux in Femwater

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I used femwater to simulate a transient practical case, and I want to know the water balance of groundwater system in an average condition.

I summed up flux of upstream nodes and downstream nodes and averaged them.

The water balance error seems to be between 20%~50%.

I think it's good enough, but is this method correct?

Does a node in transient calculate the flux twice?

Thank you!

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